Hi, i have JoomlaJunkie Morph template installed, it took me a while to figure out why javascript and CSS were not working after installing JoomSEF,
Finally I realized that when Morph pack and zip JS and CSS there are variables in meta tags links rel="stylesheet" and script type="text/javascript" that have to stay for them to work properly.
What i did : in JoomSEF advanced configuration added - Custom non-SEF variables:: render;gzip;cache

Everything is working now [hope this will be useful advice for Morph users]

My question is:
I need to make sure that i did a right thing, below is how links are generated before and after:
I use JoomSEF together with Mighty Resource extension.

Home page - Morph css and js zipped before JoomSEF:
<link rel="stylesheet" href="/index.php?render=css&amp;cache=15&amp;gzip=1&amp;lang=en" type="text/css" />

Home page - Morph css and js zipped after JoomSEF:
<link rel="stylesheet" href="/home?render=css&amp;gzip=1&amp;cache=15" type="text/css" />

OR

MightyResource Category Article List page - Morph css and js zipped before JoomSEF:
<link rel="stylesheet" href="/index.php?option=com_resource&amp;view=list&amp;category_id=16&amp;Itemid=66&amp;lang=en&amp;render=css&amp;cache=15&amp;gzip=1" type="text/css" />

MightyResource Category Article List page - Morph css and js zipped after JoomSEF:
<link rel="stylesheet" href="/accommodations/accommodations?render=css&amp;gzip=1&amp;cache=15" type="text/css" />

My confusion is when when Morph refers meta tag to stylesheet link in /accommodations/accommodations bu it's technically not there, is it normal?
Thank you

Hello,
that is a pain, because I think JoomSEF tries to SEF part of the category URL.
I would advice you to try using index2.php instead of index.php in the links. There should be no effect to functionality, as the output is anyway not HTML, but CSS or JS and such linsk will be ignored by JoomSEF completely.

An alternative approach would be defining a "non-sefing" rules in JoomSEF. That is fill in a patter of these speical links to tell JoomSEF not to SEF such links.
However, the solutution with index2.php would be preffer, more effective and also less resource demanding (=faster).